pam50 algorithm Search Results


nearest pam50 centroid algorithm  (Bioclassifier LLC)
90
Bioclassifier LLC nearest pam50 centroid algorithm
Breast bacterial community composition varies by <t>PAM50</t> intrinsic subtypes. ( A ) Violin plots show median and interquartile range as measured by Shannon and Simpson diversity indices within breast tissue from Ethiopian BC patients. p -value results were obtained from Kruskal–Wallis tests. ( B ) PC plot shows the clustering pattern of the intrinsic subtypes based on unweighted UniFrac distance and is colored by sample types (green—luminal A, red circles—luminal B, teal—HER2E, and purple circles—basal-like tumor samples); p = 0.378 and R 2 = 0.799. Taxonomic composition of the breast microbiome, depicted as relative percentage at the ( C ) phylum, ( D ) family, and ( E ) genus level.
Nearest Pam50 Centroid Algorithm, supplied by Bioclassifier LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/pam50+algorithm/breast+pam50+subtyping+assay/pmc10571711-115-11-15
Average 90 stars, based on 1 article reviews
nearest pam50 centroid algorithm - by Bioz Stars, 2026-09
90/100 stars
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pam50 algorithm  (NSABP Foundation)
90
NSABP Foundation pam50 algorithm
Breast bacterial community composition varies by <t>PAM50</t> intrinsic subtypes. ( A ) Violin plots show median and interquartile range as measured by Shannon and Simpson diversity indices within breast tissue from Ethiopian BC patients. p -value results were obtained from Kruskal–Wallis tests. ( B ) PC plot shows the clustering pattern of the intrinsic subtypes based on unweighted UniFrac distance and is colored by sample types (green—luminal A, red circles—luminal B, teal—HER2E, and purple circles—basal-like tumor samples); p = 0.378 and R 2 = 0.799. Taxonomic composition of the breast microbiome, depicted as relative percentage at the ( C ) phylum, ( D ) family, and ( E ) genus level.
Pam50 Algorithm, supplied by NSABP Foundation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/pam50+algorithm/pam50+classifier/pmc05903647-307-40-29
Average 90 stars, based on 1 article reviews
pam50 algorithm - by Bioz Stars, 2026-09
90/100 stars
  Buy from Supplier

Image Search Results


Breast bacterial community composition varies by PAM50 intrinsic subtypes. ( A ) Violin plots show median and interquartile range as measured by Shannon and Simpson diversity indices within breast tissue from Ethiopian BC patients. p -value results were obtained from Kruskal–Wallis tests. ( B ) PC plot shows the clustering pattern of the intrinsic subtypes based on unweighted UniFrac distance and is colored by sample types (green—luminal A, red circles—luminal B, teal—HER2E, and purple circles—basal-like tumor samples); p = 0.378 and R 2 = 0.799. Taxonomic composition of the breast microbiome, depicted as relative percentage at the ( C ) phylum, ( D ) family, and ( E ) genus level.

Journal: Cancers

Article Title: Human Breast Tissue Microbiota Reveals Unique Microbial Signatures that Correlate with Prognostic Features in Adult Ethiopian Women with Breast Cancer

doi: 10.3390/cancers15194893

Figure Lengend Snippet: Breast bacterial community composition varies by PAM50 intrinsic subtypes. ( A ) Violin plots show median and interquartile range as measured by Shannon and Simpson diversity indices within breast tissue from Ethiopian BC patients. p -value results were obtained from Kruskal–Wallis tests. ( B ) PC plot shows the clustering pattern of the intrinsic subtypes based on unweighted UniFrac distance and is colored by sample types (green—luminal A, red circles—luminal B, teal—HER2E, and purple circles—basal-like tumor samples); p = 0.378 and R 2 = 0.799. Taxonomic composition of the breast microbiome, depicted as relative percentage at the ( C ) phylum, ( D ) family, and ( E ) genus level.

Article Snippet: Finally, the distinct intrinsic subtype classification was estimated using the nearest PAM50 centroid algorithm in Bioclassifier and NanoStringNorm implemented in R [ ] and according to the classification method as described previously [ ].

Techniques:

Specific bacterial genera correlate with clinicopathologic features. Mean relative abundances (proportions) of bacterial genera that were differentially present in breast tumors stratified by ( A ) IHC type ( B ) PAM50 breast tumor subtype, and ( C ) early or advanced stage. Crossed-out boxes indicate samples for which specific genera were not detected. Color bars vary on a logarithmic scale. All genera shown had FDR-corrected p -value < 0.05 by Kruskal–Wallis H-test.

Journal: Cancers

Article Title: Human Breast Tissue Microbiota Reveals Unique Microbial Signatures that Correlate with Prognostic Features in Adult Ethiopian Women with Breast Cancer

doi: 10.3390/cancers15194893

Figure Lengend Snippet: Specific bacterial genera correlate with clinicopathologic features. Mean relative abundances (proportions) of bacterial genera that were differentially present in breast tumors stratified by ( A ) IHC type ( B ) PAM50 breast tumor subtype, and ( C ) early or advanced stage. Crossed-out boxes indicate samples for which specific genera were not detected. Color bars vary on a logarithmic scale. All genera shown had FDR-corrected p -value < 0.05 by Kruskal–Wallis H-test.

Article Snippet: Finally, the distinct intrinsic subtype classification was estimated using the nearest PAM50 centroid algorithm in Bioclassifier and NanoStringNorm implemented in R [ ] and according to the classification method as described previously [ ].

Techniques: